Agnieszka Joskowiak

agnieszka.joskowiak.jpg This email address is being protected from spambots. You need JavaScript enabled to view it. | IST | Bioengineering PhD | Entering year: 2007

Research topic/area: Integration of light sensor arrays with microfluidic networks to scale down 2D fluorescence spectroscopy for high throughput organism/cell condition analysis.

Ana Carina Silva

ana.carina.silva.jpgThis email address is being protected from spambots. You need JavaScript enabled to view it. | IST | Bioengineering PhD | Entering year: 2007

Research topic/area: Acoustic Biosensors for Biomedical and Biotechnology Applications(Biomedical Devices & Technologies).

Communications/Conference presentations:

  • Vistas, C.; Silva, A.C.; Thibaud, C.; Brayner, R. Biosynthesis of new hybrid materials based on Alginate-Au, [email protected] and Carrageenan-Ag. SERS effect for bio-detection applications, Therapeutic Nano-objects Genoconference,12th June 2007, Evry/France.


Ana Francisca Lima

This email address is being protected from spambots. You need JavaScript enabled to view it. | FCTUNL | Bioengineering Systems PhD | Entering year: 2012  | Graduation year: 2017

Ana Guedes

ana.guedesThis email address is being protected from spambots. You need JavaScript enabled to view it. | FCUL | Bioengineering Systems PhD | Entering year: 2011| Graduation year: 2016


pdf  CV Ana Guedes

Thesis Title: Analysis of the Gene Regulatory Network underlying pluripotenciality in mouse Embryonic Stem cells

Supervisors: Domingos Manuel Pinto Henrique and Cláudia Lobato da Silva

Summary: Pluripotentiality and self-renewal are the two main features that define the stemness state of Embryonic Stem (ES) cells. The gene network underlying pluripotentiality has been extensively studied and a consensual view is that the NOS (Nanog, Oct4 and Sox2) network of transcription factors plays a central role in regulating ES cell status. Still, how stemness emerges from the integrated activity of this network is far from understood. Recent work has revealed a critical interaction of between the NOS network and the FGF/ERK pathway, with the balance playing a crucial role in the maintenance of stemness. In this project, I propose to design novel reporter ES cell lines that can be used as tools to understand the dynamics of the NOS-FGF/ERK interactions, and how fluctuations in Nanog levels and variations in FGF/ERK signaling components underlie a state in which individual stem cells are able to simultaneously manifest their pluripotency features while being ready to respond to differentiation inducing signals.

Ana Lúcia Rosário

ana.rosario.jpg This email address is being protected from spambots. You need JavaScript enabled to view it. | FCTUNL | Bioengineering PhD | Entering year: 2007

Cv Ana Lúcia Rosário; LinkedIn

PhD supervisor: Margarida Archer (ITQB-UNL)  ; Li-Huei Tsai (PILM-MIT)

Thesis Title (2013): Funcional and structural studies of two enzymes: membrane bound kinaseand Z-DNA/Z-RNA binding protein

Thesis Abstract: The neocortex is a unique structure designed for higher cognitive and associative functions. Herein, we will refer to the work performed to assess the role of TAOK2α, a specific membrane bound kinase, in the mammalian neocortical development. The results obtained, delineate a pathway whereby Semaphorin3A and Neuropilin1 transduce signals through TAOK2α and c-Jun N-terminal Kinase to regulate basal dendrite development and migration in cortical neurons. This work represents the first approach aimed at understanding the mechanisms responsible for the delineation of basal and apical dendrites during pyramidal neuron development in the embryo, and how such mechanism may evolve to neocortical disconnection disorders. Additional work performed on humanTAOK2α focused at the determination of its three-dimensional structure by X-ray crystallography to elucidate its regulatory mechanism. The 20th century exciting discovery of the DNA left-handed conformation, and the fact it binds to certain classes of proteins with high affinity and specificity, indicated a biological role to it. However, a full function is still to be elucidated. The human double-stranded RNA adenosine deaminase (ADAR1) is the best characterized of all Z-DNA binding proteins, where Zα domain binds and stabilizes Z-DNA/Z-RNA forms upon binding. The second part of this thesis describes the work on the ZαADAR1 domain that binds to Z-RNA/Z-DNA. When a section of a DNA or RNA molecule forms a left-handed Z-DNA/Z-RNA segment, two B-Z/A-Z junctions are formed. Herein, we describe the study carried out on the formation of Z-Z junctions from DNA and, also, the approach on trying to describe the Z-Z junction for RNA when interacting with ZαADAR1. The structure of the Z-Z-DNA junction consists of a single base pair that leads to partial or full disruption of the helical stacking. The junction region allows intercalating agents to insert themselves into the left-handed helix, which is otherwise resistant to intercalation.

Full thesis available for download at Universidade Nova de Lisboa's Repository 

Ana Rosário has successfully discussed her thesis onDecember, 2013, with the following members of the jury: 

  • Maria Armenia Abreu Fonseca de Carvalho Teixeira Carrondo,  Instituto de Tecnologia Química e Biológica da Universidade Nova de Lisboa;
  • Manuel Luis de Magalhaes Nunes da Ponte,Faculdade de Ciências e Tecnologia da Universidade Nava de Lisboa;
  • Luis Miguel Gales Pereira Pinto, Instituto de Ciências Biomédicas Abel Salazar da Universidade do Porto;
  • Domingos Manuel Pinto Henrique,  Instituto de Histologia e Biologia do Desenvolvimento da Faculdade de Medicina da Universidade de Lisboa;
  • Shabir Husein Najmudin,  Faculdade de Medicina Veterinaria Universidade de Lisboa;
  • Margarida Archer Baltazar Pereira da Silva Franco Frazão,  Instituto de Tecnologia Química e Biológica da Universidade Nova de Lisboa;


  • Pikyee Ma, Filipa Varela, Malgorzata Magoch, Ana Rita Silva, Ana Lúcia Rosário, José Brito, Tânia Filipa Oliveira, Przemyslaw Nogly, Miguel Pessanha, Meike Stelter, Arnulf Kletzin, Peter J.F. Henserson, Margarida Archer. "An Efficient Strategy for Small-Scale Screening and Production of Archaeal Membrane Transport Proteins in Escherichia Coli." Edited by Hendrik W. van Veen. PLoS ONE 8, no. 10 (October 7, 2013): e76913. doi:10.1371/journal.pone.0076913.
  • Rosa, M. de, Sanctis, D. de, Rosario, A.L., Archer, M., Rich, A., Athanasiadis, A., Carrondo, M.A., 2010. Crystal structure of a junction between two Z-DNA helices. Proc. Natl. Acad. Sci. 107, 9088–9092. doi: 10.1073/pnas.1003182107.
  • De Anda, F.C., Rosario, A.L., Durak, O., Tran, T., Gräff, J., Meletis, K., Rei, D., Soda, T., Madabhushi, R., Ginty, D.D., Kolodkin, A.L., Tsai, L.-H., 2012. Autism spectrum disorder susceptibility gene TAOK2 affects basal dendrite formation in the neocortex. Nat. Neurosci. 15, 1022–1031. doi: 10.1038/nn.3141